Matrix: Pajek/yeast
Description: Pajek network: yeast protein interaction network
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| (undirected graph drawing) |
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| Matrix properties | |
| number of rows | 2,361 |
| number of columns | 2,361 |
| nonzeros | 13,828 |
| # strongly connected comp. | 101 |
| explicit zero entries | 0 |
| nonzero pattern symmetry | symmetric |
| numeric value symmetry | symmetric |
| type | binary |
| structure | symmetric |
| Cholesky candidate? | no |
| positive definite? | no |
| author | S. Sun, L. Ling, N. Zhang, G. Li, R. Chen |
| editor | V. Batagelj |
| date | 2003 |
| kind | undirected graph |
| 2D/3D problem? | no |
| Additional fields | size and type |
| PIN_class | full 2361-by-1 |
| nodename | full 2361-by-154 |
Notes:
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Pajek network converted to sparse adjacency matrix for inclusion in UF sparse
matrix collection, Tim Davis. For Pajek datasets, See V. Batagelj & A. Mrvar,
http://vlado.fmf.uni-lj.si/pub/networks/data/.
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Yeast protein interaction / long names
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Dongbo Bu, etal.: Topological structure analysis of the
protein-protein interaction network in budding yeast.
Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450
http://www.bioinfo.org.cn/PIN/
http://www.imb-jena.de/jcb/ppi/PPI_PDF_free/bu2003.pdf
transformed in Pajek format: V. Batagelj, 25. July 2003
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Yeast protein interaction / PIN class
-------------------------------------
Dongbo Bu, etal.: Topological structure analysis of the
protein-protein interaction network in budding yeast.
Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450
http://www.bioinfo.org.cn/PIN/
transformed in Pajek format: V. Batagelj, 25. July 2003
PIN class encoding:
1-T, 2-M, 3-U, 4-C, 5-F, 6-P, 7-G, 8-D, 9-O, 10-E, 11-R, 12-B, 13-A
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| SVD-based statistics: | |
| norm(A) | 19.4861 |
| min(svd(A)) | 7.18759e-41 |
| cond(A) | 2.71108e+41 |
| rank(A) | 1,644 |
| null space dimension | 717 |
| full numerical rank? | no |
| singular value gap | 1.7232e+12 |
| singular values (MAT file): | click here |
| SVD method used: | s = svd (full (A)) ; |
| status: | ok |

For a description of the statistics displayed above, click here.
Maintained by Tim Davis, last updated 12-Mar-2014.
Matrix pictures by cspy, a MATLAB function in the CSparse package.
Matrix graphs by Yifan Hu, AT&T Labs Visualization Group.