Matrix: Arenas/celegans_metabolic

Description: C. elegans metabolic network

Arenas/celegans_metabolic graph
(undirected graph drawing)


Arenas/celegans_metabolic

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  • download as a MATLAB mat-file, file size: 16 KB. Use UFget(2407) or UFget('Arenas/celegans_metabolic') in MATLAB.
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  • download in Rutherford/Boeing format, file size: 11 KB.

    Matrix properties
    number of rows453
    number of columns453
    nonzeros4,065
    # strongly connected comp.1
    explicit zero entries0
    nonzero pattern symmetrysymmetric
    numeric value symmetrysymmetric
    typeinteger
    structuresymmetric
    Cholesky candidate?no
    positive definite?no

    authorJ. Duch, A. Arenas
    editorA. Arenas
    date2005
    kindundirected multigraph
    2D/3D problem?no

    Additional fieldssize and type
    nodenamefull 453-by-1712

    Notes:

    Arenas set: C. elegans metabolic network                              
    http://deim.urv.cat/~aarenas/data/welcome.htm                         
                                                                          
    Graph of the metabolic network of C.elegans. Data processed by members
    of Alex Arenas' group.                                                
    Reference: Community identification using Extremal Optimization,      
     J. Duch and A. Arenas, Physical Review E , vol. 72, 027104, (2005).  
    

    SVD-based statistics:
    norm(A)162.044
    min(svd(A))2.76956e-17
    cond(A)5.8509e+18
    rank(A)450
    null space dimension3
    full numerical rank?no
    singular value gap1.65412e+12

    singular values (MAT file):click here
    SVD method used:s = svd (full (A)) ;
    status:ok

    Arenas/celegans_metabolic svd

    For a description of the statistics displayed above, click here.

    Maintained by Tim Davis, last updated 12-Mar-2014.
    Matrix pictures by cspy, a MATLAB function in the CSparse package.
    Matrix graphs by Yifan Hu, AT&T Labs Visualization Group.