Computer & Information Science & Engineering
University of Florida
Email : lastname at cise dot ufl dot edu
Previously I was a postdoc at the INRIA-AMIB Project at Ecole Polytechnique first on a CNRS postdoc, and then on an INRIA postdoc. Before that, my PhD was supervised by Tanya Berger-Wolf and Ashfaq Khokhar at UIC.
I recently organized the 1st International Workshop on Robustness and Stability of Biological Systems and Computational Solutions, held in conjunction with ACM BCB this year. I also chaired the PhD Student Forum.
For fun, my Erdos number is at most 4: Erdos <-> Aviezri Fraenkel <-> Edward M Reingold <-> Tanya Berger-Wolf <-> Me.
Me <-> R. Backofen <-> B.Berger <-> D. J. Kleitman <-> P. Erdos.
It seems Microsoft Academic Search would like to credit me with a lot more than I have actually done... Thank you for this. On Google Scholar I created a profile and can manage it.
I helped organize or served in the PC of:ACM CIKM 2012, ACM BCB 2012, BIOKDD 2012, BiCoB 2012, ICOSST 2011, LIX Bioinformatics Colloquium 2010.
I have served as reviewer for:Workshop on Algorithms in Bioinformatics (WABI), International Computing and Combinatorics Conference (COCOON), Tools and Algorithms for the Construction and Analysis of Systems (TACAS), Journal of Combinatorial Optimization, Advances in Bioinformatics.
Merging Phylogenetic Trees while optimizing quality
Stability of Phylogenetic Trees
KINALYZER: Sibling Reconstruction from Microsatellite Markers
BBP: Folding of Transmembrane Beta Barrel Proteins
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List of papers:
Feb From Sibling Reconstruction to Protein Folding and Beyond, University of Central Florida, Orlando, FL.
Feb From Sibling Reconstruction to Protein Folding and Beyond, University of Florida, Gainesville, FL.
Feb From Sibling Reconstruction to Protein Folding and Beyond, Florida International University, Miami, FL.
Jan Consensus and Energy-based Structure Prediction of Transmembrane Beta-Barrel Proteins, LRI, Universite Paris-Sud, Orsay, France.
July Efficient and scalable parallel reconstruction of sibling relationships from genetic data in wild-populations, Boston College, Boston, MA.
July Efficient and scalable parallel reconstruction of sibling relationships from genetic data in wild-populations, Boston University, Boston, MA.
Oct Reconstruction of Parental Genotype from Microsatellite Data, INFORMS 2009 Annual Meeting, San Diego, CA.
Apr Half-Sibling Reconstruction A Theoretical Analysis, DIMACS Workshop on Algorithmics in Human Population-Genomics, DIMACS, Rutgers University
Apr Combinatorial problems in Kinship Analysis, Midwest Theory Day, University of Wisconsin at Milwaukee
Jan Reconstructing Sibling Relationships from Genetic Data, University of Illinois at Urbana- Champaign
Jan Reconstructing Sibling Relationships from Genetic Data, INFORMS ICS conference 2009, Charleston, SC
Dec Qualitative methods for Sibling Reconstruction from genotyping data, Midwest Theory Day, Northwestern University
Nov Reconstructing Sibling Relationships from Genetic Data, Illinois Institute of Technology