Md Mahmudul Hasan's picture
Md Mahmudul Hasan[ Resume ]
Ph.D. Candidate
CISE Department, University of Florida
UF logo

Office: Lab E333 CISE (Bioinformatics Lab)
Email: mmhasan 'At' cise 'DoT' ufl 'dOt' edu,

Research Interests: Bioinformatics - Biological Network Analysis, Biological Network Alignment, Indexing Biological Network Database, Frequent subgraph mining.


I am a Ph.D. candidate, working with Dr. Tamer Kahveci at the Department of Computer & Information Science & Engineering at the University of Florida. I am a member of the Bioinformatics Lab.


Education

Publications

Journal Articles

Signaling network construction using incomplete RNAi data
Yuanfang Ren, Qiyao Wang, Md Mahmudul hasan, Ahmet Ay and Tamer Kahveci
BMC Systems Biology 2016   ( Submitted )

Construction of signaling pathways with RNAi data and multiple reference networks
Md Abdul Alim, Ahmet Ay, Md Mahmudul hasan, My T. Thai and Tamer Kahveci
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2016   ( Submitted )

Indexing a protein-protein interaction network expedites network alignment
Md Mahmudul hasan and Tamer Kahveci
BMC Bioinformatics 2015
Link:   ( PDF )

A scalable method for discovering significant subnetworks Md Mahmudul hasan, Yusuf Kavurucu and Tamer Kahveci
BMC Systems Biology 2013
Link:   ( PDF )

Efficient approaches for designing reversible binary coded decimal adders
Ashis Kumer Biswas, Md Mahmudul Hasan, Ahsan Raja Chowdhury and Hafiz Md Hasan Babu
Microelectronics Journal vol:39, pp: 1693-1703, 2008
Link:   ( PDF )

Conference Articles

Construction of signaling networks with incomplete RNAi data
Qiyao Wang, Yaunfang Ren, Md Mahmudul Hasan, Ahmet Ay, and Tamer Kahveci
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015

Multiple Reference Networks Improve Accuracy of Signaling Network Reconstruction
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai and Tamer Kahveci
ACM conference on Bioinformatics, Computational Biology and Biomedical Informatics (ACM BCB), 2015

Incremental network querying in biological networks
Md Mahmudul hasan and Tamer Kahveci
ACM conference on Bioinformatics, Computational Biology and Biomedical Informatics (ACM BCB), 2014
Link:   ( PDF )   Presentation:   ( Link )

Color distribution can accelerate network alignment
Md Mahmudul hasan and Tamer Kahveci
ACM conference on Bioinformatics, Computational Biology and Biomedical Informatics (ACM BCB), 2013
Link:   ( PDF )   Presentation:   ( Link )   Poster:   ( Link )

SiS: Significant subnetworks in massive number of network topologies
Md Mahmudul hasan, Yusuf Kavurucu and Tamer Kahveci
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2012
Link:   ( PDF )   Presentation:   ( Link )  

A prior knowledge based approach to infer gene regulatory networks
Md Mahmudul hasan and Nasimul Noman
International Symposium on Biocomputing, 2010
Link:   ( PDF )  

A Novel Approach to Design BCD Adder and Carry Skip BCD Adder
Ashis Kumer Biswas, Md Mahmudul Hasan, Moshaddek Hasan, Ahsan Raja Chowdhury and Hafiz Md. Hasan Babu
The 21st International Conference on VLSI Design, 4-8 January 2008, pp: 566-571 (IEEE Computer Society 2008)
Link:   ( PDF )  

Book Chapters

Indexing for similarity queries on biological networks
Gunhan Gulsoy, Md Mahmudul Hasan, Yusuf Kavurucu and Tamer Kahveci
Biological Data Mining and its Applications in Healthcare.

My Google scholar page: Md Mahmudul Hasan
My ResearchGate page: Md Mahmudul Hasan

Work Experience

  • Graduate Fellow, Department of Computer & Information Science & Engineering, University of Florida (August 2011 - Present)
  • Lecturer, Department of Computer Science and Engineering, University of Dhaka (August, 2009 - Present) [ on leave ]
  • Lecturer, Faculty of Engineering, Eastern University, Bangladesh (January, 2009 - August, 2009)

Programming Experience

I have good knowledge about advanced data structures and algorithms. I solved 616 problems in the UVa online judge. This is my uHunt profile.

Honors and awards

  • UF Alumni Graduate Fellowship
  • From the University of Florida, August 2011 - Present
  • Saidur Rahman Foundation Scholarship
  • For obtaining the highest marks in the M.S. among the students of Faculties of Arts, Social Sciences, Sciences, Biological sciences and Engineering, University of Dhaka.
  • Abdul Hakim and Asadunnesa Foundation Scholarship
  • For obtaining the highest marks in the M.S. among the students of Faculties of Sciences, Engineering and Biological sciences, University of Dhaka.
  • Attorney Alamgir Gold Medal
  • For obtaining the highest marks in the B.Sc. (Honors) among the students of Faculties of Science, Biological Sciences and Pharmacy, University of Dhaka.
  • University Grants Commission (UGC), Bangladesh Scholarship
  • For the B.Sc. results in the Faculty of Engineering, University of Dhaka.
  • Dean’s Award from the Faculty of Engineering, University of Dhaka
  • For the B.Sc. results in the Faculty of Engineering, University of Dhaka.
  • Provost Award, Fazlul Haque Hall, University of Dhaka
  • For the B.Sc. results in the Faculty of Engineering, University of Dhaka.
  • Dhaka Education Board Scholarship
  • For the results in the Higher Secondary Certificate examination.
  • Dhaka Education Board Scholarship
  • For the results in the Secondary School Certificate examination.