Xuehui Li Ph. D. The Department of Computer and Information Science and Engineering University of Florida E-mail: xli@cise.ufl.edu Ph.D. Advisor: Tamer Kahveci Ph.D. Dissertation: Identification and application of repetitive biological sequences

Research Interests

I am interested in the applications of Computer Science to Molecular Biology, especially algorithm development. My current research focuses on the identification of repetitive biological sequences and the application of such sequences in Molecular Biology.

Publications

• Xuehui Li*, Tamer Kahveci
  A Novel Algorithm for Identifying Low-complexity Regions in a Protein Sequence
  Bioinformatics 22:24 (2006), 2980-2987 (PubMed) (Bioinformatics)
  
• Xuehui Li*, Tamer Kahveci
  Quality-Based Similarity Search for Biological Sequence Databases
  BIOCOMP 2007 (full text)
• Xuehui Li*, Tamer Kahveci, A. Mark Settles
  A Genome-Scale Repeat Finder Geared towards Transposons
  Bioinformatics 2007; doi: 10.1093/bioinformatics/btm613 (Bioinformatics)
  

  Under Review

• Xuehui Li*, Tamer Kahveci
  Biological Sequence Search in the Presence of Low Complexity Regions
  

Bioinformatics Software That I Developed

• A low complexity region finder: GBA
• Quality based sequence similarity search algorithms: QDPS and QHTS
• A genome-scale repeat finder: Greedier

Service

Referee

• Gene

  External Reviewer

• KDD 2007, ISMB 2006, ISDM 2005

Links

The Bargain Queens

Last modified: Tuesday, December 18, 2007