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Wenxing Ye

Cell: 352-573-9674
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I received my B.E. from the department of Automation at University of Science and Technology of China (USTC) in 2004. I am currently a PhD candidate in the department of Electrical and Computer Engineering at the University of Florida. My research interests include multidimensional signal/image processing, medical imaging and image analysis. I am under the guidance of Dr. Baba C. Vemuri and Dr. Alireza Entezari.

Now, I am looking for a research/development position in medical imaging, image processing, computer vision and machine learning. Here are links to my Curriculum Vitae and Publications.

Education

University of Florida (UF) 2006 - Present

Major: Electrical and Computer Engineering

Graduate University of Chinese Academy of Science (GUCAS) 2004 - 2006

Enrolled in graduate program associated with the National Lab of Pattern Recognition, CAS

University of Science & Technology of China (USTC) 1999 - 2004

Major: Automation
Dual: Computer Science

Summary of Qualifications
  • Ph.D. candidate with five years' experience in a variety of topics of medical imaging, signal processing, computer vision and machine learning. Expected to graduate at May 2012.
  • Self motivated, fast learning team worker with solid math background and analytical skills.
  • Proficient in MATLAB and C/C++.
  • Familiar with Windows and Linux development environments and software packages such as vuVolume, POV-Ray for 3D image rendering and ITK for image analysis.
  • Research Experience

    Electrical & Computer Engineering, UF 2006 - Present

    Image/Signal Processing

    • Working on data reconstruction from its projections. Trying to improve the reconstruction accuracy through introducing different box splines (e.g., tensor product B-spline, 7-direction box spline on Cartesian lattice, linear and quintic box splines on body centered cubic (BCC) lattice) as the basis function and taking advantages of the property that box splines are closed under Radon transform.
    • Working on generalizing the univariate sinc wavelets to image samples on arbitrary lattices based on the idea of Brillouin zone decomposition.
    • Designed a new geometric framework for explicit derivation of multivariate sampling functions (sinc) on multidimensional lattices. This geometric approach also provides a frequency partition of the spectrum that leads to a non-separable extension of the 1-D Shannon (sinc) wavelets to the multivariate setting. Also, proposed a generalization of the Lanczos window function to provide a practical and unbiased approach for signal reconstruction on sampling lattices. This framework is general for lattices of any dimension and experiments on 3D body centered cubic (BCC) and face centered cubic (FCC) lattices validated the theoretical expectations about their superiority over the Cartesian lattice. This scheme was implemented as part of the vuVolume rendering package.
    • Worked on developing the innovative cubic spline interpolation scheme on the BCC lattice based on its unique tetrahedralization. Designed the finite-differencing scheme on the BCC lattice with guaranteed order of accuracy. This cubic spline is comparable to the tensor-product Catmull-Rom spline on the Cartesian lattice since they are both C1 interpolating and fourth-order methods. The interpolation algorithm is integrated to the vuVolume rendering package. Its implementation is simple and computation is efficient.
    • Implemented a Fourier volume rendering algorithm with viable illumination model for MRI data visualization. Achieved interactive rendering for changing viewing point and light source.
    • Worked on Poisson image editing which is actually image inpainting under guidance of a reference gradient field. A more computationally efficient generalized capacitance matrix algorithm was adopted and reduced the computational complexity from O(nlogn) to O(n).
    • Investigated the feasibility of solid concentration measurement in liquid-solid two-phase flow using impedance spectroscopy. Built an online impedance analysis system with Agilent 4294A and gave preliminary results showing the relationship between the solid concentration and the conductance of the slurry at low and high frequencies.

    Medical Imaging

    • Improved the tomographic approach to reconstruction of diffusion propagators from diffusion weighted MRI data. Achieved higher reconstruction accuracy through introducing the interlaced multi-shell sampling geometry and body centered cubic (BCC) lattice which are more efficient in sampling the diffusion signal. In addition, proposed a novel box spline based tomographic reconstruction framework with higher approximation order. Experiments on mouse brain scans acquired from a 600MHz (14.1 Tesla) imaging spectrometer showed that the improved approach can recover more fiber crossings within areas of the deep gray and white layers of the superior colliculus.
    • Experienced in real DW-MRI data analysis, including data formatting, denoising, motion correction through 3D image registration, fiber tracking and results visualization. Used Non-local means algorithm for denoising, different affine and non-rigid registration algorithms for motion correction, e.g. using cross cumulative residual entropy and using Gaussian mixture models on SIFT point sets.

    Computer Vision

    • Developed a target detection algorithm for Synthetic Aperture Radar (SAR) ground surveillance and tested on the public VHF change detection problem set released by US air force on SDMS. Applied change analysis, rotation invariant features and I-Relief feature weighting techniques to reduce the false alarm level. With the same number of correct detections, the proposed scheme gives only 11 false alarms compared with 86 given by the benchmark algorithm.
    • Developed a room number recognition algorithm for an autonomous robot, Koolio. The number plate was located according to its characteristic of edge richness and the numbers was recognized through template matching.
    • Implemented image segmentation demos based on generalized principle component analysis (GPCA) and active contour (snake) model with termination potentials and balloon factor.

    Machine Learning

    • Worked on large population speaker recognition problem. Developed a content/language independent demo system in C++ with CMU Sphinx toolkit. It models speech data with Gaussian Mixture Model (GMM) in Mel-Frequency Cepstral Coefficients (MFCC) feature space and does classification using Maximum Likelihood (ML) classifier. The demo system was tested on TIDIGITS dataset and by Narus Software on real recordings from hundreds of speakers and gave 100% recognition rate.
    • Worked on text mining, specifically authorship identification problem using bag-of-words model, naive Bayes classifier and maximum margin feature weighting techniques. Lemur toolkit was used for feature extraction.
    • Examined the possibility of detecting potential Parkinson patients through fractal analysis on real EEG (Electroencephalography) data collected from healthy persons and Parkinson patients. The Hurst parameter, phase space and Lyapunov exponent were analyzed and the Hurst parameter showed the best discrimination between healthy person and Parkinson patient.

    National Lab of Pattern Recognition, Chinese Academy of Science 2004 - 2006

    • Developed a real-time object detection system in C++ using high speed line-scan camera, specifically for the application of cotton impurity inspection. Focused on problems of color space discrimination and motion compensation.
    Courses Taken
    Medical image analysis, Computer vision, Advanced machine learning, Pattern recognition, Statistical decision theory, Introduction to nonlinear optimization, Numerical analysis, Spectral estimation, Adaptive signal processing, Biological signal processing, Differential geometry, etc.
    Professional Activities
  • IEEE and SIAM student member.
  • Reviewer of IEEE Visualization Conference, EuroVis, IEEE Transactions on Medical Imaging, IEEE Transactions on Circuits and Systems for Video Technology and Signal Processing, ELSEVIER
  • Publications
  • Wenxing Ye and Alireza Entezari, "Design of Bivariate Sinc Wavelets", ICIP, 2012, accepted.
  • Xie Xu, Wenxing Ye and Alireza Entezari, "On Bandlimited Reconstruction of Volumetric Data", Submitted to EuroVis, 2012.
  • Wenxing Ye, Baba C. Vemuri and Alireza Entezari, "An Over-complete Dictionary Based Regularized Reconstruction of A Field of Ensemble Average Propagators", IEEE International Symposium on Biomedical Imaging, 2012, accepted.
  • Wenxing Ye, Sharon Portnoy, Alireza Entezari, Stephen J. Blackband, Baba C. Vemuri, "Efficient Interlaced Multi-shell Sampling Scheme for Reconstruction of Diffusion Propagators", IEEE Transactions on Medical Imaging, accepted.

  • Sharon Portnoy, Wenxing Ye, Alireza Entezari, Stephen J. Blackband, Baba C. Vemuri, "A Novel Interlaced Sampling Scheme for Multi-Shell q-space Magnetic Resonance Microscopy", International Society for Magnetic Resonance in Medicine (ISMRM), 2011.

  • Wenxing Ye, Christopher Paulson and Dapeng Wu, "Target Detection for VHF SAR Ground Surveillance", IET Computer Vision, accepted.
  • Wenxing Ye and Alireza Entezari, "A Geometric Construction of Multivariate Sinc Functions ", IEEE Transactions on Image Processing, in press.
  • Mahsa Mirzargar, Nithin Thezheveettil, Wenxing Ye and Alireza Entezari, "Cubic interpolation on the body centered cubic lattice", Submitted to IEEE Transactions on Visualization & Computer Graphics.
  • Wenxing Ye, Sharon Portnoy, Alireza Entezari, Baba C. Vemuri and Stephen J. Blackband, "Box spline based 3D tomographic reconstruction of diffusion propagators from MRI data", IEEE International Symposium on Biomedical Imaging, 2011 (Accepted for oral presentation).
  • Wenxing Ye, Alireza Entezari and Baba C. Vemuri, "Tomographic reconstruction of diffusion propagators from DW-MRI using optimal sampling lattices", IEEE International Symposium on Biomedical Imaging, 2010.
  • Wenxing Ye, Dapeng Wu and Antonio Nucci, "Experimental study on GMM-based speaker recognition", Proceedings of SPIE Defense & Security Symposium 2010, Orlando, FL, USA, April 5-9, 2010.
  • Wenxing Ye, Christopher Paulson, Dapeng Wu and Jian Li, "A target detection scheme for VHF SAR ground surveillance", Proceedings of SPIE Defense & Security Symposium 2008, Orlando, FL, 2008.
  • Wenxing Ye, Christopher Paulson, Dapeng Wu and Jian Li, "A rotation-invariant transform for target detection in SAR images", Proceedings of SPIE Defense & Security Symposium 2008, Orlando, FL, 2008.
  • James F. Klausner, Rick Grove, Abdullah Kendoush and Wenxing Ye, "Solids composition measurements of phosphate slurry using impedance spectroscopy, phase I: feasibility study, final report", Florida Institute of Phosphate Research, Aug. 2008, Publication No. 04-072-228, Project No. 05-04-072R.
  • Sara Keen, Wenxing Ye et al., "Koolio: An autonomous refrigerator robot", Proceedings of Florida Conference on Recent Advances in Robotics, Miami, FL, 2006.
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