FBW2005
Posters
1. Paleobiochemistry:
Elucidating Protein Function Through the Resurrection of Ancestral
Proteins. The Case of Seminal Ribnuclease .
S. Sassi1,
E.A. Gaucher3, J.M. Thomson4 and S.A. Benner1,2,3.
1Department
of Anatomy and Cell Biology, University of Florida.
2Department
of Chemistry, University of Florida.
3Foundation
of Applied Molecular Evolution.
4Department
of Cell and Developmental Biology, University of North Carolina
2. An Evolutionary History of 14-3-3 Protein Interaction
Matthew F. Reyes, Steven A. Benner, Robert J. Ferl
Department of Plant Molecular
and Cell Biology, Department of Anatomy and Cell Biology, Department
of Chemistry
University of Florida
3. Transition Redundant
Approach-to-Equilibrium (TREx) Analysis of Mammalian Sequences
Tang Li1,
Eric A. Gaucher1, David A Liberles2, Stephen
G. Chamberlin1, and Steven A. Benner1
1 Foundation
for Applied Molecular Evolution, P.O. Box 13174, Gainesville FL
32604; 2Computational Biology
Unit, Bergen Center for Computational
Science, University of Bergen, 5020
Bergen, Norway
4.
Identification of missing tRNA modification genes by comparative
genomics
Valérie de Crécy-Lagard
Department of Microbiology
and Cell Science, University of Florida and Scripps Research Institute,
La Jolla.
5. IMGEM Interactive Multiple Gene Expression
Maps:
Gene Expression
Databases for Post Genome Knowledge Discovery
Srikanth
Yellanki, Balaji Gandhi, Kiminobu Sugaya
Burnett College of Biomedical Sciences, University of Central Florida
6.
A Benchmark Study of Database Search Algorithms on a Transposon
Database
Brian
Lam, Nathan VanderKraats, Karn Ratana, Laura Momol, and Su-Shing
Chen
Department
of Computer Information Science and Engineering
University
of Florida
7. Text mining and
knowledge discovery of the MEDLINE Database: Gene Ontology and
Knowledge Networks
HYUNKI
KIM AND SU-SHING CHEN
Department
of Computer and Information Science and Engineering
University
of Florida
8. PACK:
A Phylogenetic Algorithm for Tree Construction Based On K-Gram
Frequency Vectors
YONGLING SONG, SU-SHING
CHEN
Department of Computer
and Information Science and Engineering
University of Florida
9. The Bioinformatic Challenge in Brain Injury Neuroproteomics
Andrew K. Ottens 1,2,3, Firas H. Kobeissy 1,2,4, Zhiqun Zhang 1,2,3, Erin
Golden 1,3, Regina Wolper 1,3, Su-Shing Chen 1,5, Ming Chen Liu 1,2,3,
Ronald L. Hayes 2,3,4, Kevin K. W. Wang 1,2,3,4
Centers for Neuroproteomics and Biomarkers Research1 and Traumatic
Brain Injury Studies 2 Departments of Neuroscience 3 and Psychiatry 4 of the McKnight Brain Institute; Department of Computer and Information Science and Engineering5
University of Florida
10.
BlastQuest: A tool for managing transcriptome annotation.
William
G. Farmerie, Li Liu, Fahong Yu, and Anuj Sahni
Bioinformatics
Core, Interdisciplinary Center for Biotechnology Research
University
of Florida.
11. A Web Portal for
Collaborative Genome Annotation
L. Liu1,
W. G. Farmerie1, M. Patnaikuni2, D. Brown3,
D. Gabriel4
1 Interdisciplinary
Center for Biotechnology Research, 2 Department of
Computer and Information Science and Engineering, 3
Plant Pathology Department, 4 Department of Pathobiology,
University of Florida
12. A New Meta-Analysis
Method for Microarray Studies
L. Liu1, M.
Popp1, X. Liu2, W. G. Farmerie1,
G. Casella2, S. Goodison3
1 Interdisciplinary
Center for Biotechnology Research, 2 Department of
Statistics, 3 Department of Pathology, University of
Florida
13.
A Data Quality Model for Genomic Repositories
Alexandra Martinez and
Joachim Hammer
Department of Computer
and Information Science and Engineering
University of Florida
14. A Graph-Theoretic
Algorithm for Detecting Calcium Binding Sites
Guantao
Chen1,2, Hai Deng2*, Xuezheng Fu2,
Jenny J. Yang3, Wei Yang3
1Department
of Mathematics and Statistics, 2Department of Computer
Science, 3Department of Chemistry, Georgia State University
15. Identifying Shared
Functional Binding Site Modules In Sets Of Orthologs
Hailong Meng1,3,
Arunava Banerjee1 and Lei Zhou2,3
1Department
of Computer Information Science & Engineering, 2Department
of Molecular Genetics & Microbiology, 3UFSCC College
of Medicine
University of Florida
16. Comparative Study
of Sequence, Chemical, and Functional Properties of FMRFamide-Like
Neuropeptideseptides (FLPs) and Their Precursor cDNAs/Proteins
in Caenorhabditis elegans and C. briggsae.
A. Dossey* and A. S.
Edison
Department of Biochemistry
& Molecular Biology
University of Florida
17. INFERRING CORRECT
POSITIONAL HOMOLGY AND SUBSTITUTION SATURATION IN HIV-1 V1-V3
ALIGNMENTS.
Marco Salemi 1,
Maureen M. Goodenow 1, and. Susanna L. Lamers 2.
(1) Department
of Pathology Immunology and Laboratory Medicine, University of
Florida
(2) Gene Johnson
Inc, St. Augustine, FL
18. Co-transcription
of proteasome and tRNA modification genes of the haloarchaeon
Haloferax volcanii.
Malgorzata A.Gil and
J. A. Maupin-Furlow
Department of Microbiology
and Cell Science
University of Florida
19.
Molecular Characterization of Haloferax volcanii 20S Proteasomes
Reveals an Intramolecular Mechanism of b-protein
Processing
A. J. Wright, J. A. Maupin-Furlow,
Department of Microbiology and Cell Science, University of Florida
20. Data Analysis
of Transcription Start Site of Human Genome
Raja Loganantharaj
Center for Advanced Computer
Studies
University of Lousiana
at Lafayette
21.
Algebraic and Numeric challenges in Modeling Virus Formation
J.
Peters, M. Sitharam, J. Fan and Y. Zhou
Department of Computer Information Science and Engineering
University of Florida
22. Effects of a Soy Isoflavone Concentrate on Gene Expression Profiles in PC-3 Human Prostate Cancer Cells
Renita Handayani*, Yuehua Cui£, Lori P. Rice*, Theresa A. Medrano*, Henry V. Baker§, and Kathleen T. Shiverick*
Departments of *Pharmacology and Therapeutics, *Surgery, §Molecular Genetics and Microbiology, College of Medicine, and Department of £Statistics, College of Liberal Arts and Sciences, University of Florida
23. Correlogram method
for comparing bio-sequences
Gandhali Samant, Debasis
Mitra and Kuntal Sengupta
Department of Computer
Sciences
Florida Institute of
Technology