DNA Simulation/Design Methods  

  

Lerman & Silverstein '87

Leonard S. Lerman and Karen Silverstein. "Computational Simulation of DNA Melting and Its Application to Denaturing Gradient Gel Electrophoresis." Methods in Enzymology 155, 1987.

  

Rychlik & Rhoads '89

Wojciech Rychlik and Robert E. Rhoads. "A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA." Nucleic Acids Research 17(21):8543-8551 , 1989.

  

Seeman '90

Nadrian C. Seeman. "De Novo Design of Sequences for Nucleic Acid Structural Engineering." J. of Biomolecular Structure & Dynamics 8(3):573-581, 1990.

  

Makarova et al. '92

Kira S. Makarova, Yury I. Wolf, Alexander V. Mazin, and Victor V. Soloviev. "`DIROM'--An Interactive System for Planning Experiments on Directed Mutagenesis and Construction of Artificial Genes." Molecular Biology 26(1):72-80, 1992.

  

Makarova et al. '92a

Kira S. Makarova, Alexander V. Mazin, Yury I. Wolf and Victor V. Soloviev. "DIROM: An experimental design interactive system for directed mutagenesis and nucleic acids engineering." Computer Applications in the Biosciences 8(5):425-431, 1992.

  

Piechocki et al. '94

Marie P. Piechocki and Ronald N. Hines. "Oligonucleotide Design and Optimized Protocol for Site-Directed Mutagenesis." BioTechniques 16(4):702-706, 1994.