Gunhan Gulsoy

News

I am expected to finish my PhD in August 2013, and I am joining Google after I graduate!
Download My CV

Education

• University of Florida, CISE (PhD) 2009-2013(expected)
      Advisor: Tamer Kahveci
• Middle East Technical University, Computer Engineering (BSc) 2004-2010
• University of Copenhagen, Mathematics, 2008

Publications

1. Indexing for similarity queries on biological networks
   Gunhan Gulsoy, Md Mahmudul Hasan, Yusuf Kavurucu, Tamer Kahveci
   Biological Data Mining and its Applications in Healthcare(to appear)
   
2. Inferring gene functions from metabolic reactions
   Gunhan Gulsoy , Tamer Kahveci
   GENSIPS 2012, Washington DC
   
3. HIDEN: Hierarchical decomposition of regulatory networks
   Gunhan Gulsoy , Nirmalya Bandhyopadhyay , Tamer Kahveci
   BMC Bioinformatics, 2012, 13:250 (Full text)
4. TOPAC: Alignment of gene regulatory networks using Topology Aware Coloring
   Günhan Gülsoy, Bhavik Gandhi, Tamer Kahveci
   Journal of Bioinformatics and Computational Biology (JBCB) Volume 10, Issue 01, February 2012(Abstract)
   
5. Mining biological networks for similar patterns
   Ferhat Ay, Günhan Gülsoy, Tamer Kahveci
   in "DATA MINING: Foundations and Intelligent Paradigms, Volume 3", Editors: Dawn E. Holmes and Lakhmi C. Jain, Springer
   (SpringerLink)
6. Topology aware coloring of gene regulatory networks
   Günhan Gülsoy, Bhavik Gandhi, Tamer Kahveci
   Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine Pages 435-440(Abstract)
7. RINQ: Reference-based Indexing for Network Queries
   Günhan Gülsoy, Tamer Kahveci
   Bioinformatics 2011 27: i149-i158(Abstract)
8. Finding steady states of large scale regulatory networks through partitioning
   Ferhat Ay, Günhan Gülsoy, Tamer Kahveci
   GENSIPS 2010(IEEE Xplore)