Projects for CAP 5510 - Bioinformatics, Fall 2009

Team

Project Title/Page

Presentation Date

Etan Shaul

Comparison of secondary protein structure prediction methods

TBD

Tae Seung Kang

Detecting functional orthology with global alignment of multiple protein interaction networks using IsoRank algorithm

TBD

Carlo Joseph Pascoe

Hardware Implementation of Needleman-Wunsch Algorithm for use in ESPRIT Application

TBD

Irene Dhong

http://sites.google.com/site/irenedhong

TBD

Jeff Cashion

The application of multi-processing on the Needleman-Wunsch algorithm for sequence alignment

TBD

Steve Robinette

A Genetic Algorithm for Optimized Cluster Analysis of Gene Expression Data

TBD

Ashutosh Ranjan, Michael Kane, Bhavik Gandhi

Expanding on existing methods for querying pathways in a protein-protein interaction network

TBD

Gunhan Gulsoy

Similarity queries in biological network databases

TBD

Rituraj Bhuyan, Steven Vanlandingham, Upanita Goswami

Study and analysis of advanced techniques for Secondary Structure Prediction

TBD

Usame Ceylan, Hongjie Dong

Sequence Analysis Tool

TBD

Stephen Williams

An Evaluation of Protein Database Searching Programs

TBD

Jangsung Lee

Sequence Compression

TBD

Srinivasan Ramkumar, Pavan Kumar

Tandem repeat finder in a DNA sequence

TBD

Seon Kim

Bayesian Inference using Neural Net Likleihood Models for Protein Secondary Structure Prediction

TBD

Eduardo Buenviaje

Comparison of Various Pattern Search Algorithms

TBD