Research

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§ Publications

A. Martinez, J. Hammer, and S. Ranka. “BioDQ: Data Quality Estimation and Management for Genomics Databases.” Accepted for ISBRA’08, to appear in Lecture Notes in Bioinformatics.

A. Martinez. “BIODQ: A Model for Data Quality Estimation and Management in Biological Databases.” Doctoral Dissertation, University of Florida, October, 2007. (pdf)

A. Martinez, J. Hammer, and S. Ranka. “A Model for Quality Estimation in Biological Data Sources." CISE Technical Report REP-2007-293, January, 2007.

Martinez and J. Hammer. “Making Quality Count in Biological Data Sources.” Second International ACM SIGMOD Workshop on Information Quality in Information Systems (IQIS 2005), Baltimore, MD, June 17, 2005.

A. Martinez and J. Hammer. “A Data Quality Model for Genomic Repositories.” Florida Bioinformatics Workshop 2005 (FBW 2005), Gainesville, FL, February 21-22, 2005.

§ Doctoral Project

Please visit this page for more information about my doctoral project.

§ Relevant Course Projects

ú Bioinformatics (CAP5510):

· Project: Phylogenetic Reconstruction Using Neighbor-Joining And Maximum Likelihood Methods With Different Evolutionary Models.

· Survey: Methods of Phylogenetic Inference and Models of Evolution.

ú Indexing Large Databases (CIS6930):

· Project: Implementation of Hilbert and Z space-filling curves on top of a B-Tree index structure, in C++.

· Using B-Trees and a Space Filling Curve to Index 2-D Data (Project Report/Paper).

· A Fast Index For Semistructured Data (Presentation).

ú Computational Molecular Biology (CAP5515):

· Project: Implementation of a wavelet-based index for a nucleotide database, in Java.

· Index Structures For String Databases (Presentation).

· Project Report (Presentation)

· Wavelet-based index scheme for a plant genomics database (Project Paper).

ú Computer Architecture (CDA5155):

· The Intel Itanium 2 Architecture (Presentation).