• UF Sparse Matrix Collection
  • Matrix group: vanHeukelum
  • Click here for a description of the vanHeukelum group.
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  • Matrix: vanHeukelum/cage13
  • Description: DNA electrophoresis, 13 monomers in polymer. A. van Heukelum, Utrecht U
  • download as a MATLAB mat-file, file size: 18 MB. Use UFget(914) or UFget('vanHeukelum/cage13') in MATLAB.
  • download in Matrix Market format
  • download in Rutherford/Boeing format

    vanHeukelum/cage13

    vanHeukelum/cage13 graph

    Matrix properties
    number of rows445,315
    number of columns445,315
    nonzeros7,479,343
    structural full rank?yes
    structural rank445,315
    # of blocks from dmperm1
    # strongly connected comp.1
    entries not in dmperm blocks0
    explicit zero entries0
    nonzero pattern symmetrysymmetric
    numeric value symmetry 20%
    typereal
    structureunsymmetric
    Cholesky candidate?no
    positive definite?no

    authorA. van Heukelum
    editorT. Davis
    date2003
    kinddirected weighted graph
    2D/3D problem?no

    Ordering statistics:AMD METIS
    nnz(chol(P*(A+A'+s*I)*P'))1.527063e+10 2.230274e+09
    Cholesky flop count1.3e+15 4.1e+13
    nnz(L+U), no partial pivoting3.054081e+10 4.460103e+09
    nnz(V) for QR, upper bound nnz(L) for LU1.867396e+10 6.414549e+09
    nnz(R) for QR, upper bound nnz(U) for LU2.917877e+10 1.158605e+10

    Maintained by Tim Davis, last updated 04-May-2008.
    Matrix pictures by cspy, a MATLAB function in the CSparse package.
    Matrix graphs by Yifan Hu, AT&T Labs Visualization Group.