• UF Sparse Matrix Collection
  • Matrix group: Barabasi
  • Click here for a description of the Barabasi group.
  • Click here for a list of all matrices
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  • Matrix: Barabasi/NotreDame_yeast
  • Description: CCNR network: Barabasi's yeast protein interaction
  • download as a MATLAB mat-file, file size: 12 KB. Use UFget(1511) or UFget('Barabasi/NotreDame_yeast') in MATLAB.
  • download in Matrix Market format
  • download in Rutherford/Boeing format

    Barabasi/NotreDame_yeast

    scc of Barabasi/NotreDame_yeast

    Barabasi/NotreDame_yeast graph

    Matrix properties
    number of rows2,114
    number of columns2,114
    nonzeros4,480
    structural full rank?no
    structural rank1,273
    # of blocks from dmperm649
    # strongly connected comp.417
    explicit zero entries0
    nonzero pattern symmetrysymmetric
    numeric value symmetrysymmetric
    typebinary
    structuresymmetric
    Cholesky candidate?yes
    positive definite?no

    authorH. Jeong, S. Mason, A. Barabasi, Z. Oltvai
    editorH. Jeong
    date2001
    kindundirected graph
    2D/3D problem?no

    Notes:

    http://www.nd.edu/~networks
    

    Ordering statistics:AMD METIS
    nnz(chol(P*(A+A'+s*I)*P'))6,653 7,936
    Cholesky flop count7.8e+04 1.4e+05
    nnz(L+U), no partial pivoting11,192 13,758
    nnz(V) for QR, upper bound nnz(L) for LU64,010 68,983
    nnz(R) for QR, upper bound nnz(U) for LU35,098 40,168

    Maintained by Tim Davis, last updated 04-May-2008.
    Matrix pictures by cspy, a MATLAB function in the CSparse package.
    Matrix graphs by Yifan Hu, AT&T Labs Visualization Group.