Abstract: This talk is in the area of computational molecular simulation: specifically, correlating geometric and mechanical properties of materials using computational models. The transport of molecules through carbon nanotubes and the effect of filling on nanotube mechanical properties are examined with classical molecular dynamics simulations. In particular, the transport of molecular oxygen and small organic molecules through nanotubes is examined as a function of tube diameter and configuration. Molecular transport mechanisms are predicted to depend on molecular size and shape and nanotube diameter. The insights from these simulations indicate how nanotube-based membranes might be tailored for optimal performance. In addition, the mechanical responses of filled nanotubes subjected to applied bending, tensile, compressive, and torsion forces are examined and compared to the responses of pristine systems. The results indicate that the forces needed to deform filled nanotubes are larger than those required to deform empty nanotubes. The magnitude of the increase depends on the type of filling material and, in the case of multi-walled tubes, the number of inner tubes. The insights and failure criteria developed from these simulations can be used to design carbon nanotube-based devices and materials, such as nanoelectromechanical systems and nanocomposites, which undergo loading through the external application of forces.